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What is the most likely classification of the novel organism? (1 mark)
The ecologists used a quantitative PCR (qPCR) assay to investigate the abundance of the novel organism in several different ecological niches including hydrothermal vents, deep-sea sediments and shallow coastal waters. The qPCR assay was performed using a primer that specifically targeted a gene carried by the novel organism.
Examine the qPCR results shown above. Which ecological niche (hydrothermal vents, deep-sea sediments, shallow coastal waters) had the highest abundance of the novel organism? Briefly explain how you reached this conclusion. (2-3 sentences) (2 marks)
The researcher conducted the GWAS using next-generation sequencing technology. Did the researcher conduct whole genome sequencing or whole exome sequencing? Use the information available above to justify your response. (2-3 sentences) (2 marks)
The ACTC1 gene encodes an actin protein that is only expressed in cardiomyocytes (i.e. cardiac muscle cells). The schematic below shows the histone modifications that are present in the promoter region in cardiomyocytes vs fibroblasts (i.e. skin cells).
Use the information provided above to explain why the gene is actively expressed in cardiomyocytes but not fibroblasts. (2-3 sentences) (2 marks)
Use the drop-down boxes to complete the following sentences: (0.5 marks each, 1 mark total)
In cardiomyocytes the
In fibroblasts the
The ACTB gene encodes an actin protein that is ubiquitously expressed in all human cells. As shown in the schematic below, the promoter region of the gene is embedded within a CG island.
The researcher uses a specialised laboratory technique to examine DNA methylation in the promoter region. What do you hypothesise the researcher will find? (1 mark)
The ACTB and genes are located on two different chromosomes as shown in the image below.
Use the drop-down boxes to classify the chromosomes. (0.5 marks each, 1 mark total)
ACTB is located on
ACTC1 is located on
The biomedical
researcher discovers that the defective acyl-CoA dehydrogenase subunits in the HEP-M2
cell line are targeted for proteasomal degradation. Which post-translational
modification is likely responsible for targeting acyl-CoA dehydrogenase to the
proteasome?
Explain why the mutation in the HEP-M2 cell line completely disrupts the
assembly of the acyl-CoA dehydrogenase homotetramer, whereas the mutation in
the HEP-M3 cell line has no impact on the assembly or structure of the
homotetramer. (2-3 sentences) (2 marks)
The import of acyl-CoA dehydrogenase into the mitochondrion is defective in cell line HEP-M1. The researcher used subcellular fractionation and western blotting to detect acyl-CoA dehydrogenase in different subcellular compartments. The western blotting results for normal healthy hepatocytes and the HEP-M1 cell line are summarised in the figure below.
Which of the following mutations (A, B, C) is most likely present in the HEP-M1 cell line? Use the western blotting results and your knowledge of the mitochondrial protein import process to justify your response. (2-3 sentences) (2 marks)
A. The acyl-CoA dehydrogenase mitochondrial signal sequence is mutated B. The receptor protein in the TOM complex is mutated C. The translocation channel in the TIM23 complex is mutated
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